Parser for PAF to find structural variants

2

Need to evaluate two large (1Gb) chromosome-level assemblies of the same genome by means of finding large structural variations between the two (duplication, inversion, deletion etc). I am trying to use minimap2 to get this sort of statistics (similiar to somewhat classical nucmer - show-diff approach), but I couldn't find any parser for .paf files (only paftools.js from minimap' creator, but it does not produce desired statistics). Conversion of .paf to .delta and using dna-diff is somehow imperfect.

Do you know any parser of .paf files for finding stuctural variations? Or a workaroung of a problem comparing two large assemblies?
Many thanks!


parser


assembly


evaluation

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