I need data for some cancers which include well-defined subtypes/groups and be available in TCGA....
I have some UNC Illumina RNAseqV2 data with about 100 genes, 800 patients with UNC ID. I'd like t...
Hello all, I have a set of VCF files of normal and tumor samples. Are there any tools available t...
Hi,
First of all, I want to clarify that I dont think TCGA can do RNA seq only for tumor sample?...
Hello,
I am doing a small assignment for an intro to computational biology class, and I was told...
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I'm trying to recreate pipeline that was described in [Bioinformatics Analysis of Whol...
Hi All,
I've been working on my own survival analysis of PDAC, following the tutorial ww...
Hi Everyone,
I am trying to analyze TCGA-BRCA (harmonized) data using TCGAbiolinks and I am stuc...
I have a signature genes similar to pam50 (breast cancer signature) from other tumor. How should ...
I am attempting to do a DEA analysis of matched paired BRCA normal tumour samples using TCGAbioli...
I have downloaded BRCA patient data from TCGA. There is rsem.genes.normalised_result file associa...
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I was provided with TCGA-BRCA RNASeq V2 FPKM Tumor-Normal matched data which I inte...
Hello - I am new to survival analysis and would like to perform category specific Coxph analysis ...
Hi guys,
I'm analyzing **structural variants** in paired tumor-healthy human samples with **[man...