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2 hours ago by

Hey there,

I'm trying to map pair ended samples to genome. But when I map them in the single ended way, they can be mapped.

I can get bam files in both two methods. Pair ended way leads to a really low mapping rate, on the other hand, single ended produce very high rate approximately 97%.

I use bowtie2 for mapping.

What is the problem?


modified 2 hours ago

2 hours ago


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