gravatar for chimerajit

2 hours ago by

United States

I have few RNASeq samples where samples are carrying over expressed gene for e.g.

Sample1 = over expressed gene ABC,
Sample2 = over expressed gene DBG ... etc.

and they also have a common control(which not carrying any over expressed gene)

Now do I just perform typical RNA-Seq analysis using Hisat ---->Stringtie-----> ballgown or I need to treat these samples special and do some standardization before ?

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