Orthofinder:How to obtain single copy homologous sequences from result files
orthofinder -fg RESULTS_DIR -M msa -oa
The command described above does not yield a single copy of the homologous gene.
I also have a question here, that is, we use protein sequences for alignment and clustering analysis, and if I finally want to get the corresponding nucleotide sequence, what should I do?
Thanks in advance!
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