ontology and annotation file format in cytoscape

0

hi,

i am using bingo app in cytoscape for a non model organism to calculate overrepresented GO terms in the network,i am using customize option where i made my own annotation and ontology files for the organism as it was instructed in the bingo tutorial.But when i click on start button nothing happens,no output is there.

annotation file(annotation.anno) that i created is as follows:

(species=Brugia malayi)(type=Biological Process)(curator=GO)
Bm1_00120    = 0015986
Bm1_00120    = 0000275
Bm1_00120    = 0046961
Bm1_00120    = 0046933
Bm1_00125    = 0003676
Bm1_00125    = 0008270
Bm1_00130    = 0005524
Bm1_00130    = 0004672
Bm1_00130    = 0006468

ontology file(ontology.obo) that i created is as follows:

(curator=GO)(type=process)
0015986 = ATPsynthesiscoupledprotontransport
0000275 = mitochondrialproton-transportingATPsynthasecomplex,catalyticcoreF(1)
0046961 = proton-transportingATPaseactivity,rotationalmechanism
0046933 = proton-transportingATPsynthaseactivity,rotationalmechanism
0003676 = nucleicacidbinding
0008270 = zincionbinding
0005524 = ATPbinding

Can anyone help me with the files and tell me where i am going wrong.

 

 


annotation and ontology file format

• 2.2k views

updated 2 hours ago by

▴

100

written 6.1 years ago by

▴

20



Source link