gravatar for pv

2 hours ago by

pune, India

I merged three datasets, two from same platform and one from a different platform, after merging I performed normalization and try to visualize using boxplot. But I am not getting a proper boxplot. I used the following codes:

# normalization of merged file
#change to summarize experiment file
mergenorm<- normalize(sum, norm.method = "quantile", data.type = "ma")
#converted to matrix file for boxplot
JM3<- assay(mergenorm)
#boxplot for normalized data
boxplot(exprs(JM3))

boxplot:
![got a boxplot in this image][1]
Rplot

can anyone suggest what went wrong? or I can use any other plot?

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modified 2 hours ago

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2 hours ago
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pv0



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