gravatar for Manoj

5 hours ago by

United States

Hi all,

I have a set of 82 VCFs files, I merged these all into one as a genotype file and a phenotype of five traits as data. I am looking to make a possible association of these data using Mixed linear model. I tried TASSEL in many ways with different parameters. However, I am not getting any potential significant SNPs after multiple correction using FDR and bonferroni.

Please suggest any other software/pipelines, which can be useful for GWAS study.

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5 hours ago
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Manoj80



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