gravatar for gabri.mochales

6 hours ago by

Good afternoon,
I'm trying to merge to bam files, one mapped and another unmapped, with gatk (MergeBamAlignment) but I keep having this error all the time:

Inappropriate call if not paired read

Does anybody know why? I found this post (gatkforums.broadinstitute.org/gatk/discussion/12259/mergebamalignment-problem) where the user have the same type of problem, but changing the alignment solves it but unluckily I can't do that.
When I run ValidateSamFile from Picard, I don't have any errors for both bam files.

Any help is appreaciate it! Thanks in advance!



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