gravatar for MAPK

2 hours ago by

Hi All,

I am using GATK after several years. I used to merge chromosomes chr{1..22} chrX and chrY with same samples using catVariants in GATK3. It looks like they have replaced this tool with something different on GATK4. So I would like to confirm if I am using right tools-

  1. Do I use GatherVcfs to consolidate all chromosomes?
  2. If I need to merge two VCFs with different samples, do I use MergeVCFs?

TIA

link

modified 8 minutes ago

written
2 hours ago
by

MAPK1.7k



Source link