gravatar for S AR

2 hours ago by

Pakistan

Im trying to replace GT:AD:DP:GQ:PL values from all samples in a multi vcf file with 1.

My file looks like this:

Pos 6620    6734    6737    6742    6750    7151    7212    7362
Alt A   A   A   G   GC  A   T   G
ERR038741   0   1:1,213:214:99:7391,0   0   0   0   0   1:2,205:207:99:7078,0   1:0,191:191:99:7383,0
ERR040140   0   1:1,336:337:99:11415,0  0   0   0   0   0   0
ERR046796   0   1:4,180:184:99:5672,0   0   0   1:3,182:185:99:6609,0   0   0   0
ERR046903   0   1:1,170:171:99:6142,0   0   0   1:1,158:159:99:5954,0   0   0   0
ERR067581   0   1:0,86:86:99:3037,0 0   0   0   0   0   0
ERR067593   0   1:0,90:90:99:3229,0 0   0   0   0   0   0
ERR067606   0   1:0,65:65:99:2267,0 0   0   0   0   1:0,58:58:99:1971,0 1:0,62:62:99:2353,0
ERR067607   0   1:0,73:73:99:2593,0 0   0   0   0   0   0
ERR067608   0   1:0,70:70:99:2390,0 0   0   0   0   0   0
ERR067609   0   1:0,80:80:99:2826,0 0   0   0   0   1:0,75:75:99:2574,0 1:1,82:83:99:3049,0

I want the "1:0,73:73:99:2311,0: type of text to be replaced with 1.

can any one help.

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2 hours ago
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S AR50



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