Make map file with recombination rate using plink?
if I convert a bfile to ped amd map:
plink --bfile filename --recode --tab --out myfavpedfile
the 3rd column of resulting map file for is all 0. I have not been able to get germline to work and I am starting to suspect it needs this 3rd column of the map file filled with values. How do I do this?
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