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1 hour ago by

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You can use EntrezDirect:

$ esearch -db nucleotide -query "OG1RF_10009" | efetch -format acc
NC_017316.1
CP002621.1

NC* is RefSeq entry while the other is normal genome.

If you have multiple locus tags then you should be able to use epost method to seach them all.


If you need to be a little more specific than the genome accession then you can do the following.

$ esearch -db gene -query "OG1RF_10009" | efetch -format ft

1. rpsR
30S ribosomal protein S18 [Enterococcus faecalis OG1RF]
Other Aliases: OG1RF_10009
Annotation:  NC_017316.1 (10289..10528)
This record was discontinued.
ID: 12287861

$ esearch -db protein -query "OG1RF_10009" | efetch -format acc
AEA92696.1

$ esearch -db protein -query "OG1RF_10009" | efetch -format ft
>Feature gb|AEA92696.1|
1   79  Protein
            product 30S ribosomal protein S18
14  77  Region
            region  rpsR
            note    30S ribosomal protein S18; Reviewed
            db_xref CDD:178997
1   79  CDS
            product 30S ribosomal protein S18
            transl_table    11
            protein_id  gb|AEA92696.1||gnl|bcmhgsc|OG1RF_10009
            note    COG: COG0238; Pfam: PF01084; InterPro: IPR001648

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GenoMax94k



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