gravatar for peter.berry5

2 hours ago by

Hi

I am trying to use the pathfindR package to do enrichment analysis on my data. According to the vignette the package is downloaded from CRAN by

install.packages("pathfindR")

this gives the following output
Installing package into ��
(as �lib� is unspecified)
Warning in install.packages :
 dependencies ‘org.Hs.eg.db’, ‘KEGGREST’, ‘KEGGgraph’ are not available
trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.0/pathfindR_1.6.0.zip'
Content type 'application/zip' length 2782854 bytes (2.7 MB)
downloaded 2.7 MB

package ‘pathfindR’ successfully unpacked and MD5 sums checked

so I believe the package has been installed successfully. However, when I call the package by

library(pathfindR)

I get

#Error in library("pathfindR") : there is no package called ‘pathfindR’

Any thoughts/suggestions?



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