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2 hours ago by

I want to filter variants (called with MuTect2) with VariantRecalibrator and ApplyVQSR GATK tools.

However, I have only one sample, with 90,000 variants called. Would this be enough for GATK VariantRecalibrator and ApplyVQSR tools to apply a good model and properly filter my variants?

I will be grateful for any suggestions 🙂

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2 hours ago

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