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3 hours ago by

Hello, I just finished IPA assembly for my genome assembly (github.com/PacificBiosciences/pbipa), but I received two output files. The tutorial didn't mention anything, I checked two fasta files, one is

  1. final.a_ctg.fasta, it has id named " >hap_ctg.000084F_1 HAPLOTIG", "hap", I assume is haploid?

The other is
2.final.p_ctg.fasta, it has id named ">ctg.000071F_1"

Can someone explain the difference between two files, and what the letters and numbers mean, please?

(ex: hap_ctg.000084F_1, what is ctg? what is 00084? what is F_1?, for two output files, what do "a" and "p" represent in fasta name?)

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modified 3 hours ago

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h.mon31k

written
3 hours ago
by

slin0230



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