Hello, I just finished IPA assembly for my genome assembly (github.com/PacificBiosciences/pbipa), but I received two output files. The tutorial didn't mention anything, I checked two fasta files, one is
- final.a_ctg.fasta, it has id named " >hap_ctg.000084F_1 HAPLOTIG", "hap", I assume is haploid?
The other is
2.final.p_ctg.fasta, it has id named ">ctg.000071F_1"
Can someone explain the difference between two files, and what the letters and numbers mean, please?
(ex: hap_ctg.000084F_1, what is ctg? what is 00084? what is F_1?, for two output files, what do "a" and "p" represent in fasta name?)