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2 hours ago by

Germany

I have a list of metabolites quantified using targeted metabolomics.
I then have KEGG KOs inferred from metagenomic data.

I would like to see whether there is any KEGG pathway among the one detected that has several metabolites in my data.

In other words, I want to see what pathway is enriched in the metabolites I detected.
I am aware of Bioconductor packages as pathview, but there I need to plot each pathway individually.
Instead I am more interested in have a sort of automatic screening that could tell me that a path in my metagenomic datasets has also many metabolite matches in my metabolomic dataset.

I could also use another database, I am not limited to KEGG, this was just a initial choice.
Any idea whether this is feasible?

Thank you

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dago2.6k



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