Install Kent Source Archive Binaries
I need to convert several whole-genome files from .fasta files to .2bit as part of Brandt Faircloth's UCE pipeline.
In it, it is recommended that you use a program from the Kent Source Archive called faToTwoBit, found here: hgdownload.soe.ucsc.edu/admin/exe/macOSX.x86_64/. I can download the associated binary to my working directory using this line of code:
...but when I try to run it, I get this error:
dyld: Library not loaded: /usr/local/opt/freetype/lib/libfreetype.6.dylib Referenced from: /Users/melospiza/bin/faToTwoBit Reason: image not found
From the error and the information on the page linked above, I assume this is a library issue, as three libraries (listed below) are apparently required to run the program.
- /usr/lib/libc++.1.dylib (compatibility version 1.0.0, current version
- /usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current
- /usr/lib/libiconv.2.dylib (compatibility version 7.0.0, current
However, I'm just not really sure how, or where to install those, or even to check my computer's set of libraries to see which ones I need. Any help you can offer would be greatly appreciated.
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