I am trying to visualise multiple pathways onto Cytoscape - I load them individually before merging them. However, I encountered a problem whereby the pathway that I loaded through KEGGparser-web was not as complete as the one I viewed on KEGG's website.
I had also tried downloading the KGML file and load it onto Cytoscape and returned with the same result. Although WikiPathway gave a more comprehensive pathway visualisation, I would like to stick with KEGG since the upstream analysis was using KEGG.
An example of the pathway is HSA 00533 (Glycosaminoglycan synthesis - keratan sulfate). Could anyone please advise me how to best visualise the pathway as complete as the one on the KEGG website?