IDR (Irreproducible Discover Rate) on more than two replicates

3 hours ago by

Hi,

Can someone share their experience on using IDR on more than two replicates? I know Encode pipeline can do this but it's really hard for me to see how they do this.
Or if someone can point me to the script used for Encode for more than two replicates that would be great too.

Thank you in advance!