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5 hours ago by

I want to run GSEA on my DEGs from scRNA-seq analysis, which contains gene name, logFC, p-value, adjusted p-value data. However, in the Broad Institute GSEA tutorial on how to format input files, their file contains gene expression across multiple samples but not DEGs.

Is there any way to use DEGs input in GSEA software?
If not, are there any other gsea tools that can calculate enrichment scores using DEGs data?



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