gravatar for jzhongqiang

3 hours ago by

How to transform the deg gene list from seurat to a gene list input to clusterProfiler compareCluster ?

the deg gene list from seurat

cluster gene

z1 x1 Id2
z2 x1 Fabp3
z3 x1 Id1
z4 x1 Bex1
z5 x1 Bex3
z6 x1 Tceal9
z14 x2 Id2
z15 x2 Fabp3
z16 x2 Id1
z17 x2 Bex1
z18 x2 Bex3
z19 x2 Tceal9
z20 x2 Ddx39
z21 x2 Prdx2
z29 x2 Sdhb
z30 x3 Mybbp1a
z31 x3 Nsmce1
z32 x3 Ubl4a
z33 x3 Clint1

gene list input to clusterProfiler compareCluster

x1 x2 x3
Id2 Id2 Mybbp1a
Fabp3 Fabp3 Nsmce1
Id1 Id1 Ubl4a
Bex1 Bex1 Clint1
Bex3 Bex3
Tceal9 Tceal9
Ddx39
Prdx2
Sdhb

Thank you very much.

link

modified 2 hours ago

written
3 hours ago
by

jzhongqiang0



Source link