This thread: github.com/vgteam/vg/issues/3316
seems to be the most comprehensive trail of documentation on how to run, but that seems impossibly difficult to follow.
Is there documentation on a simple set of commands like:
vg autoindex ?? vg map $fastqs ... vg giraffe $call-set > genotyped-svs.vcf
That I can see to understand the basic steps?
Then it might be feasible for me to understand the workflows.