gravatar for Linus

12 hours ago by

Edinburgh

Hi all,

I've got some Hi-C data that I'm trying to analyze. However, being a wet-lab person, I have minimal experience whatsoever with bioinformatics.
So far, I've got some paired-end Hi-C data which I've aligned to the genome, performed deduplication of reads and created contact matrices using tools like HiC-Pro and Cooler.

I want to create scaling curves which show the periodicity in the genome from about 100 bp, up to 2kb. Is there any tool out there that I can make use of to make such graphs?
Screenshot-2020-11-07-161122

Thanks

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modified 9 hours ago

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12 hours ago
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Linus0



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