3 hours ago by
United States
Hi,
I have got vcf files from GATK. I have a total of 195 vcf files. Please let me know how to proceed for GWAS analysis. I have a phenotype file. Please suggest any method or workflow.
Phenotype file example:
Samples gender status
FA2001 M affected
FA2002 M affected
FA2003 M unaffected
FA2004 F affected
FA2006 F unaffected
