Hi everyone, I have some questions about single cell RNA-seq analysis.
I just got the output dat...
Hello All,
I have obtained some scRNAseq data from a repository and the data are in count.matric...
If I have a seurat object with two assay classes "ADT" and "RNA" how do I remove one or the other...
Hello,
I have a seurat object that has 3 conditions merged. When plotting feature plots I can s...
Hi all, I was wondering if somebody could help with a question i have regarding the seurat pipeli...
Hello I have to combine two data sets from 10x in seurat. one data set was prepared following 5' ...
I want to merge my seurat data of 3 experimental time points with the Hippocampus data provided ...
Hello, I have merged my VDJ data into my Seurat object by adding it as metadata. Now is there a w...
So I've been trying to learn some Seurat recently and while working on some data I noticed that t...
I have a clarification about about using Seurat package (link is satijalab.org/seurat/pbm...
Single cell technologies are booming, but figuring out how to integrate multimodal data sets is c...
I have a Seurat object I created from RNA and CITEseq data. I load the matrices and create a seur...
Hi everyone!
I am loading my single-cell ATACseq data using cicero, and then I create gene activ...
Hi All,
I have two groups WT and KO.
As per the Jackstraw plot, ‘Significant’ PCs will show a s...
Hello,
Would anyone know how to re-arrange the output of featureplots/dimplots when using the '...
Hello, I have a merged seurat object with 3 different samples in it. How would I do about color c...
I'm working with 4 samples (10x sequenced) and loading them into Seurat using the Read10x() funct...
Hi,
Whats the difference between the following in Seurat objects?
DefaultAssay(combined.dat...
I'm confused on Seurat's tutorial of integrating two datasets.
Seurat has this: nk.markers <...