How to intersect A/B compartment changes with gene expression data
How are the A to B/B to A changes tracked between two cell types PC1/2 files. One normally gets PC1/2 bigWig files that can be converted to bedGraph files which have chr, start, end, and +/- value columns (which identifies the A or the B compartments). Are the A to B/B to A changes between the two cell types bedGraph files tracked by a regex (regular expression)? I would imagine one cannot use bedtools intersect?
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