How to increase the number of matched sequences in blastn
I'm using blastn command with the following parameters' values. but since I denoise the output data in several steps, I need a higher number of sequences as the output. what parameters can I add or change the value of it to increase the number of output sequences?
blastn -query input.fasta -db ref -out BlastResults.txt -num_threads 9 -outfmt '6 qseqid sseqid sseq' -word_size 6
• 178 views