gravatar for anamaria

2 hours ago by

Hi,

can you please tell me how to include BETA and SE in the output of METAL?

when I just run:

./metal < metal.txt

I just get this columns:

head  METAANALYSIS1.TBL
MarkerName  Allele1 Allele2 Weight  Zscore  P-value Direction
rs2326918   a   g   19586.00    0.254   0.7991  --+
rs668796    c   g   19586.00    -2.064  0.03904 -+-

vi metal.txt


MARKER   SNP
DEFAULTWEIGHT   1211
ALLELE   A1 A2
EFFECT   BETA
STDERR   SE
PVAL     P

PROCESS EDIC.GWAS.reduce.txt

MARKER   SNP
ALLELE   A1 A2
DEFAULTWEIGHT   1363
EFFECT   BETA
STDERR   SE
PVAL     P

PROCESS GOKIND.GWAS.reduce.txt

OUTFILE EDIC_GOKIND_UKB_META.tbl
ANALYZE

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modified 2 hours ago

by

_r_am31k

written
2 hours ago
by

anamaria110



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