Hi all,
I have a big GFF3 file that I downloaded from Batch Entrez and it contains 54 genomes. I ...
I am analyzing the GTF file at ftp.ensembl.org/pub/release-75/gtf/homo_sapiens/Homo_sapien...
Hi,
I'm working with RNAseq data from *A. thaliana*. Reads were mapped with STAR 2.6 using the ...
Hi,
I have googled a lot about this query but I could not find a suitable answer.
I downloaded s...
Hi All,
I have generated single vcf for 2 samples. Then annotated the vcf file using snpEff and ...
Hi,
I have gff3 file in the following format:
#gff-version 3
##sequence-region Chromo...
For a given gene, I would like to take the exons or CDS coordinates for all isoforms and 'merge' ...
Hello
I want to find the exact number of my genes exons. I have 2 genes: NKX2-5 and GATA4
I know ...
Hi,
I was working with the refseq genes hg19 file to define genomic regions and I downloaded 4 f...
I am looking for a FASTA file of all CDS in the mouse genome.
The Ensembl website claims to hav...
Hi, I need to get a DNA (no mRNA) sequence of that gene: www.ncbi.nlm.nih.gov/gene/6271
A...
Hi,
I have a gff3 file wtih info: CDS exon intron and parent genes.
I am interesting to define ...
Hello, I have NGS sequencs result(vcf and fasta) file, I download reference sequence([GFF3 format...
I am wondering the criteria for denoting unknown data in cosmic db.
for example PIK3CA gene,
...
I need to take exon sequence of MSTN gene of myotis davidii and then compare it with various spec...
Hi, I have a question about the augustus (v3.0.2, v3.0.1) output - specifically when it reports t...
I am working on human cancer data and wanted to extract sequences from the human genome for analy...
Dear all,
I am using [salmon][1] to evaluate how the L.donovani gene expression varies in the t...