I have some RNA-Seq data and I am planning to run DESeq analysis on them and I am facing an error when I am assigning the gene names as row names it says "duplicate row names". I don't want to remove any genes is there any way to work around it?
Below is an example of my data
gene sample1 sample2 sample3 CCDC7 419 326 360 CNNM1 60 48 22 PAK6 208 200 176 RPP14 50 42 91 IDS 8 11 18 PAK6 702 802 612 CFTR 58 48 40 CNN3 1200 1224 1605 CNNM1 906 989 823
Have tried How To Deal With Duplicate Row Names Error In R way.
Tried to take only gene names in separate dataframe and tried to make them as row names to this data frame.
rownames(countdata2) = make.names(countdata, unique = TRUE)
But getting an error saying "Invalid row.names length". Can anyone please guide me through?
Thank you very much in advance