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2 hours ago by

Dear All,

I'm interested in checking the conservation of lncRNAs and protein-coding genes from Gencode and similarly from my data I also have some newly assembled lncRNAs which are not found in gencode. I would like to make a plot like below:

enter image description here

The above image is taken from the paper Recurrently deregulated lncRNAs in hepatocellular carcinoma. Figure 1e

Similar to above image, I also wanted to check the conservation of known lncRNAs, protein coding genes and newly found lncRNAs.

How to calculate the phastcons score for all the genes?

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