gravatar for maria2019

4 hours ago by

Hi,

I am trying to count CpG regions in one of my samples. I know that I can find DMR using DMAP/diffmeth (below is my code).
How ever, I do not know how to find (and count) methylated fragments in only one sample. Any suggestions?

diffmeth -G $ref_path -A 40,220 -U 0.05 -N -I 5 -R $sample1 -R $sample2 -S $sample3 -S $sample4



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