Please let me know if there is a way to get effect sizes (R2) from your results in GEMMA (gensoft.pasteur.fr/docs/GEMMA/0.98.1/manual.pdf)? I am calculating univariate
linear mixed model analysis using GEMMA but not sure how to get R2 in the result.
These following columns are in my result file.
chr rs ps n_miss allele1 allele0 af beta se logl_H1 l_remle p_wald