How to find tandem duplications pattern in a DNA sequence

5

Hi,

I have a DNA sequence contains a tandem duplication (the sequence of duplication is unknown) for an unknown times.

Each subsequence has some mutations, suppose repeat unit is A (length is 1~8K ) then the sequence is A1A2A3....An(A1 and An possibly are not complete).

If I want to find out the duplication unit A, how should I do?

Thanks.


Repeat


bioinformatics

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