How to extract the mean quality score of RNAseq for a sample?

Hi, I have my RNA-seq illumina paired-end data, I followed the tuxedo pipeline by the following stools, FastQC-Cutadapt- Bowtie2-Cufflinks on Galaxy

For FastQC, I have information about the per base quality score(for each position) and per sequence quality score(left column are the scores, right column are the sequence counts), for both Read 1 and Read 2, But there is no information about the mean quality scores for all the reads and all the base pairs. How to find the information?

Thanks


FastQC


RNAseq


Cutadapt


illumina


galaxy

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