gravatar for doinelpierrot

2 hours ago by

Hello everybody,

I am doing de novo transcriptom assembly of some alga. I judt did the FASTQC analysis and all my sample are "failed" regarding to the percentage of duplicate reads (= 70-80 % in all my files).

I have a total of 600M reads. Is it ok to just put my data to Trinity or is it better to do something about these duplicates reads ?
I would say that these duplicates that are probably caused by PCR will just make the assembly run a bit longer, right ?

Thank you for your help 🙂



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