I am a freshman in sequencing data analysis. When i have one fastq file for only one bacteria , i know how to assemble using Spades. For example, "spades.py --pe1-1 name.fq.gz --pe1-2 name.fq.gz -o spades_test".
But I don't know how to deal with a large number of samples with one linux command. For example, when i have 10 fastq data (name1~name10), i won't like to assemble them one by one by hand.
Can you tell me how can i do ?