I'm trying to generate mutant sequence based on the type as shown on the far right column of example data below.
transcript position mutation type WT.seq MUT.seq trx1 5 A>G substitution AAAAAA AAAAGA trx2 3 C>CTT insert CCCCCC CCCTTCCC trx3 7 TTTT>T deletion AAAAAATTTT AAAAAAT
I managed to generate 'Substitution' mutants, but I've got no clue how to make INDEL sequences.
Can someone help me solve this?
R, Python, bash, or etc.
Any language would be find~