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2 hours ago by

Hello, I am trying to make a figure like in this image. I have used Geneious but the resolution is very poor and not suitable for publication. I also tried Bio3d R-package. But could not get the desired output. Can anybody suggest how can I obtain such a figure? I could not find the proper function in bio3d package to get such a figure. Please give some suggestions.
Thank you.

Schematic of multiple sequence alignment

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