I have a CNV analysis to be done by plink, I have got the allumina data files as PED, MAP and TXT...
Hi everyone. I am newbie in bioinformatics, PLINK and bio linux. Now I've CNV, genome, genotyping...
I had 421 vcf files, I want to convert the all vcf files to the ped file (format of plink),
and ...
I have a data files contains imputed genotypes with informations in the columns as:
Family...
Can anyone suggest me how to convert a BAM allignment file to a PED and a MAP file format??
Than...
I converted PED and MAP files to bfiles using make-bed option to change the SNP identifiers,
and...
I am trying to convert a .txt and b.txt file to a1.ped and b1.map file using plink or R. I have r...
I am new in plink analysis, I have a data from chip 50k for sheep and I want to know how can I ...
Hi all,
Q1. Does anyone know a database that contains a single PED and MAP file of the latest r...
Dear all,
I need to make a phylogenetic network using unphased Illumina genotyping data stored in...
I got some 23andme samples and want to analysis them. First I converted these 23andme files into ...
I have some VCF files, and a spreadsheet with trio information (child, father and mother IDs). I ...
How can I convert a multisample vcf file to a format that can be loaded in Haploview?
I have WGS...
Hi everyone,
I'm trying to upload the PED & MAP file (tab-delimited file) into gplink to run...
Hello
How can I converting illumina raw genotype data into PLINK format?
Hello
I have PED and MAP files that I want to convert to a BAM file.
Is that possible?
I have got a BED file (used in Plink and with .bim and .fam file) which contains Affy 500K data,...
Hi all,
I have a set of HLA typed casr/control variant files annotated and with a single tab del...
I have been trying to use the Haploview software. The input files need to be in two formats- ped ...
Hi
I have ped file in plink raw format (0, 1, 2 of minor allele). I want to convert it to ped fo...
Hi,
I have a ped and map file in PLINK. I want to convert them to ped format in FBAT so i can an...
I am trying to meta-analysis of GWAS data. But I have a big troble in managing the raw GWAS data....
Hi
I have three files from a company with following names GCtype, LRR and BAF. But I need to qua...
Hi All,
I need to convert my already existing plink ped file format in to PEAS format. Please he...