how to combine contigs into chromosomes in vcf file
long time ago, i resequenced about 100 individuals and called variants mapping against an older version of the reference genome which contained 500 contigs.
However, the latest version of the reference genome was updated into chromosome level and it only contained 8 chromosomes.
So is there any solution for assembling the contigs into the latest chromosomes in my vcf file without recalling variants again?
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