gravatar for embueno

2 hours ago by

Hi everyone,

I’m using edgeR to analyze a WGBS dataset using a glm. I’m working with an invertebrate genome with very low levels of CpG methylation in the genome (~3%) and want to change the cutoff for percent the CpG methylation for my samples (methylated Cs sample A/coverage for sample A) *100 and then filter them so that at least one sample with 20% methylation or more are included in the analysis. Any ideas on how to implement this edgeR would be appreciated!



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