Hello, sorry for my late reply and thanks for your reply, actually, i don't have access to high performance computing environment, but i came across this code 'github.com/MsAlEhR/bio-protein-fold-recognition/blob/master/src/pssm_clc.py' which uses biopython but i am facing a problem in it, that when we download xml file of a protein only one iteration of blastp is carried out , but i think for pssm atleast three iterations should be there.

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