How to calculate average coverage for all genes

3

Hi friends

I want to calculate average of read count / coverage for all genes, I mean creating a list which shows number of aligned reads for each location.

For better understanding, making a proportion for all genes location and an average list of read count for the locations like :

Location = Upsrtream       0-200         200-400       400-600   ...   Downstream

Average read counts=       20reads      15reads       32reads ....

How can I make this list from bam or wig file?


wig


bam

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