How to calculate average coverage for all genes
I want to calculate average of read count / coverage for all genes, I mean creating a list which shows number of aligned reads for each location.
For better understanding, making a proportion for all genes location and an average list of read count for the locations like :
Location = Upsrtream 0-200 200-400 400-600 ... Downstream Average read counts= 20reads 15reads 32reads ....
How can I make this list from bam or wig file?
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