You can use NCBI Datasets for this. A dedicated page for Coronavirus Datasets is available. If you would prefer, a command line tool is also available. For example, you can use the command line tool to download SARS-Cov2 data as shown below:

datasets download virus genome taxon sars-cov-2 --complete-only --filename virus.zip

I click the empty box, I can only get like 200 sequences, each time.

Try this. Do not click any boxes. Click on Download button at top. In step 2 Download All Records should be automatically selected. This downloads ALL sequences. As of today that number stands at 43676 genomes (~1.2 GB file).


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