gravatar for J. Smith

4 hours ago by

Hello Friends,

I have downloaded TCGA data (gene expression, methylation) using TCGA2STAT. Now, I want to use TCGAbiolinks package for performing subsequent analysis. I want to know what function I may use to convert my already downloaded data using TCGA2STAT compatible for using TCGAbiolinks functions like TCGAanalyze_Preprocessing, TCGAvisualize_meanMethylation, etc.? I think I need to convert my data into SummarizedExperiment format. But I don't know how to convert TCGA2STAT data into SummarizedExperiment format. Please help.

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J. Smith0



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