How to analyze MBD-Seq data?

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Dear all,

I am a bit stuck on how to analyze MBD-Seq data starting from fastq.gz files.

I have got MBD-Seq data for a bunch of samples in different conditions and my goal is to reveal differences between them.

Is there anyone who could point me in the right direction to do this? I have done some checking on softwares like MEDIPS or ramwas, but I am not even sure they are 100% appropiate for my case and I get stuck at some point when trying to use them on my data.

Hope anyone can help...thank you!

David.


CpG


methyl


islands


MBD-Seq


methylation

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