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2 hours ago by

FastQTL phenotype.bed input does not have strand column as in QTLtools. How does the software deal with strand?
I guess a related question would be say gene1 is on the reverse/minus strand in GTF file. Should its end position in GTF file be the TSS (transcription start site) for fastQTL phenotype.bed input?
Thanks in advance.

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2 hours ago
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Cindy0



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