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2 hours ago by

Hi there,
I was wondering how I can tell that my bcftools command did in fact finish. The jobs took a very long time to run and I want to ensure that they did in fact finish. I have the following output within my slurm file:

[mpileup] 1 samples in 1 input files
[mpileup] maximum number of reads per input file set to -d 250
[mpileup] 1 samples in 1 input files
[mpileup] maximum number of reads per input file set to -d 250
[mpileup] 1 samples in 1 input files
[mpileup] maximum number of reads per input file set to -d 250
[mpileup] 1 samples in 1 input files
[mpileup] maximum number of reads per input file set to -d 250
[mpileup] 1 samples in 1 input files
[mpileup] maximum number of reads per input file set to -d 250
[mpileup] 1 samples in 1 input files
[mpileup] maximum number of reads per input file set to -d 250
[mpileup] 1 samples in 1 input files
[mpileup] maximum number of reads per input file set to -d 250
[mpileup] 1 samples in 1 input files
[mpileup] maximum number of reads per input file set to -d 250
[mpileup] 1 samples in 1 input files
[mpileup] maximum number of reads per input file set to -d 250
[mpileup] 1 samples in 1 input files
[mpileup] maximum number of reads per input file set to -d 250

Does this mean that the job finished running? Thanks for your help!

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modified 1 hour ago

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2 hours ago
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townsendae0



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